PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca1851.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family GATA
Protein Properties Length: 184aa    MW: 19344.5 Da    PI: 10.4847
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca1851.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA581.3e-183062133
       GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33
               C+ Cgt+kTplWR gp g+k+LCnaCG++ rkk
  Dca1851.1 30 CADCGTSKTPLWRGGPAGPKSLCNACGIRSRKK 62
               *******************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.6772460IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.66E-122464No hitNo description
SMARTSM004013.6E-132484IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.2E-152862IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.16E-122975No hitNo description
PROSITE patternPS0034403055IPR000679Zinc finger, GATA-type
PfamPF003201.4E-163062IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MTDLSDKKLE SDEHHQQQQT SEENEKAKKC ADCGTSKTPL WRGGPAGPKS LCNACGIRSR  60
KKVRVSSGIK TEKARAFSST KKSSGSGSST TTTTSSSSGS GGGGGGSSCS TLTTSSSNDK  120
SSRLVGSLNQ RLISLGREVM MQRSTVGKRS VRKNNNNNIN INKLGEDEQA AVLLMALSYG  180
SVYA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00335DAPTransfer from AT3G06740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010670911.11e-42PREDICTED: GATA transcription factor 15-like
TrEMBLA0A0K9RRQ89e-46A0A0K9RRQ8_SPIOL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.13e-34GATA transcription factor 15